Arabidopsis rna-seq database
Web13 mag 2024 · In Arabidopsis, phasiRNAs are predominantly 21-nt in length and are produced from limited numbers of gene loci including TAS, PPR, AFB and NBS-LRR [27, 28]. ... Degradome/PARE-seq and small RNA-seq data used for TarDB database construction. Rights and permissions. Web25 lug 2024 · Here, we used 622 Arabidopsis RNA sequencing data sets from 87 independent studies hosted at NCBI SRA and developed AtCircDB to systematically identify, store and retrieve circular RNAs. By analyzing back-splicing sites, we characterized 84 685 circular RNAs, 30 648 tissue-specific circular RNAs and 3486 microRNA–circular RNA …
Arabidopsis rna-seq database
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Web7 mar 2013 · The recent genome-wide study based on around 200 Arabidopsis tilling array datasets and RNA sequencing (RNA-seq) has identified thousands of lncRNAs in … WebStringTie assembles transcripts from RNA-seq reads that have been aligned to the genome, first grouping the reads into distinct gene loci and then assembling each locus into as …
WebArabidopsis RNA-seq Database Search gene expression levels from 20,000+ public Arabidopsis RNA-Seq libraries All Libraries Tutorials Cite BatchDownload. History. … WebGEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles. Getting Started Overview FAQ About GEO DataSets About GEO Profiles About GEO2R Analysis
Web29 dic 2024 · Potential candidates were then screened using more up-to-date genomic and transcriptomic data. Firstly, near ubiquitous expression across different tissues and stages of development was checked using the TRAVA RNA-seq database (Klepikova et al., 2016). http://ipf.sustech.edu.cn/pub/athrna/
Web2 ago 2024 · Arabidopsis RNA-seq Database (ARS) Description: ARS is a free, web-accessible, and user-friendly database, contributes to searching, filtering, visualizing, …
WebAbout TAIR The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana.Data available from TAIR includes the complete … pride and happinessWeb11 apr 2024 · N 6-methyladenosine (m 6 A), which is added, removed, and interpreted by m 6 A writers, erasers, and readers, respectively, is the most abundant modification in eukaryotic mRNAs. The m 6 A marks play a pivotal role in the regulation of floral transition in plants. FLOWERING LOCUS K (FLK), an RNA-binding protein harboring K-homology … pride and groom spot on for dogsWeb14 apr 2024 · RNA-seq using chromatin-bound RNA samples is known to identify defects in co-transcriptional splicing in Arabidopsis [26,43]. Since we used total RNA samples, we … plate with a holeWebArabidopsis thaliana: Annotation built on: TAIR 10 Total number of genes: 33,845: Library type: RNA-seq: Total bp in genome: 119,667,750: Protein coding: 29,942: Total number … plate with different holiday add onsWeb5 apr 2024 · The shoot apical meristem allows for reiterative formation of new aerial structures throughout the life cycle of a plant. We use single-cell RNA sequencing to define the cellular taxonomy of the Arabidopsis vegetative shoot apex at the transcriptome level. We find that the shoot apex is composed of … plate with fork and spoonWebArabidopsis (rockcress) is a genus in the family Brassicaceae.They are small flowering plants related to cabbage and mustard.This genus is of great interest since it contains thale cress (Arabidopsis thaliana), one of the … plate with glass domeWeb4 ago 2024 · In the last decade, RNA-sequencing (RNA-seq) has surpassed microarray to become the gold standard for gene expression profiling due to the continuous drop in … plate with silverware clipart