The ecology and evolution of pangenomes
WebAug 1, 2024 · The ecology and evolution of pangenomes. Cell Press, 20 (2024), pp. R1094-R1103. View PDF View article View in Scopus Google Scholar. An exceptional review detailing the ecological context of bacterial pangenomes with relevant parallels for filamentous pathogen genomes. 17. WebApr 12, 2024 · All subsequent analyses were performed in the R Statistical Environment v. 4.1 [], using the packages geomorph v.4.0.1 [], caper v.1.0.1 [], and ape v.5.6-1 []; R functions used are listed as (package: function).The 3D coordinates of the streamline semilandmarks were aligned using Procrustes superimposition and allowed to slide along tangents to the …
The ecology and evolution of pangenomes
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WebMay 1, 2024 · Review The Ecology and Evolution of Pangenomes. Brockhurst MA, Harrison E, Hall JPJ, Richards T, McNally A, MacLean C. Curr Biol. 2024 Oct 21; 29(20):R1094-R1103. Review An Experimental … WebSince the first genome-scale comparisons, it has been evident that the genomes of many species are unbound by strict vertical descent: Large differences in gene content can occur among genomes belonging to the same prokaryotic species, with only a fraction of genes being universal to all genomes. These insights gave rise to the pangenome concept. The …
WebApr 11, 2024 · Pangenomes make reference to the entire set of genes from all the strains within a clade. Therefore, we defined the core pangenome as that including those genes present in a high percentage of strains (>95%), while the accessory pangenome was defined as that representing unique or shared functions by a reduced group of strains ( Figure 5 … WebMay 1, 2024 · Ecology; Adaptation; Bacterial evolution; ... Pangenomes of bacterial species show a tremendous range of diversity in size, content, and fluidity. In comparing the core genome size in relation to the accessory genome, some species possess relatively limited pangenomes while others are expansive. Accessory genomes may be composed of genes …
WebFeb 11, 2024 · The ecology and evolution of pangenomes. Curr Biol. 2024;29:R1094–R1103. Andreani NA, Hesse E, Vos M. Prokaryote genome fluidity is dependent on effective population size. ISME J. 2024;11:1719–21. WebAbstract. Recent years have seen a surge in plant genome sequencing projects and the comparison of multiple related individuals. The high degree of genomic variation observed led to the realization that single reference genomes do not represent the diversity within a species, and led to the expansion of the pan-genome concept.
WebJul 20, 2024 · Similar to plant growth, soil carbon (C) cycling is constrained by the availability of nitrogen (N) and phosphorus (P). We hypothesized that stoichiometric control over soil microbial C cycling may be shaped by functional guilds with distinct nutrient substrate preferences. Across a series of rice fields spanning 5-25% soil C (N:P from 1:12 to 1:70), C …
WebThe ecology and evolution of pangenomes. Abstract: Since the first genome-scale comparisons, it has been evident that the genomes of many species are unbound by strict vertical descent: Large differences in gene content can occur among genomes belonging to the same prokaryotic species, with only a fraction of genes being universal to all ... ontario law for sick daysWebApr 12, 2024 · Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China. Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, China. University of Chinese Academy of Sciences, Beijing, China. Search for more papers by this author ionela ghergishanWebMar 28, 2024 · Therefore, we suggest that pangenomes are the result of adaptive, not neutral, evolution. ... Nature Ecology & Evolution (2024) A graph-based approach for the visualisation and analysis of ... ontario lawn weeds identificationWebOct 21, 2024 · In this review, we outline the mechanistic, ecological and evolutionary drivers of and barriers to horizontal gene transfer that are likely to structure pangenomes. We … ionela horvathWebThe Ecology and Evolution of Pangenomes [watch recording] University of Manchester: Vivek Mutalik, EGSB: Jun 15, 4PM (PST) Markus Covert: Simultaneous Cross-Evaluation of Heterogeneous E. Coli Datasets via Mechanistic Simulation: Stanford University: Hector Garcia Martin, BSE: Jun 22, 11AM (PST) Alexander Sommer: Cancelled: Technical … ione in ingleseWebMore than a half-century has passed since it was discovered that phytohormone cytokinin (CK) is essential to drive cytokinesis and proliferation in plant tissue culture. Thereafter, cytokinin has emerged as the primary regulator of the plant cell ontario law examWebApr 26, 2024 · April 26, 2024 Six budding research projects recognized for their potential to foster innovation and large-scale collaboration have been awarded support through the Ecology, Evolution, and Behavior (EEB) program’s new seed grant initiative.. The grants, totaling nearly $65,000, will support a range of costs associated with launching … ontario law for increasing rent